BL2SEQ
BL2SEQ uses BLAST to find local alignments between exactly two sequences. Bl2seq is a part of NCBI's BLAST (Basic Local Alignment Search Tool) suite. It performs a comparison between any two sequences provide by the user.
The following BLAST options
are available:
- blastp compares two protein sequences
- blastn compares two nucleic acid sequences
- blastx compares the six-frame conceptual translation products of a nucleic acid sequence with a protein sequence
- tblastn compares a protein sequence with the six-frame conceptual translation products of a nucleic acid sequence
- tblastx compares the six-frame translations of a nucleic acid sequence with the six-frame translations of a nucleic acid sequence.
Manual: http://bioweb.pasteur.fr/docs/man/man/blast.1.html
INPUT = Nucleic Acid or Protein Sequences.
TEST INPUT FILES
Input file: blast2seqn1_in.txt
Input file: blast2seqn2_in.txt
TEST OUTPUT FILES
Output file: blast2seqn_out1.txt
