All systems operating normally.
The CIPRES Science Gateway V. 3.3 is a public resource for inference of large phylogenetic trees. It is designed to provide all researchers with access to NSF XSEDE's large computational resources through a simple browser interface. Through a collaboration with Alexandros Stamatakis and Wayne Pfeiffer, we now offer the fastest hybrid versions of RAxML [pdf] and MrBayes [pdf] currently available, as well as RAxML-Light 1.0.9 (through our partnership with the iPlant collaborative).
High Performance Parallel Codes for Large Tree Inference and Sequence Alignment on XSEDE:
RAxML (7.4.4); MrBayes (3.1.2 and 3.2.1); GARLI (2.0); BEAST(1.7.5); MAFFT (7.037)
Serial Codes for Tree Inference:
PAUP* (Inference by Parsimony); Poy (Alignment and Inference);
Serial Codes for Sequence Alignment:
ClustalW; Contralign; FSA; MUSCLE; PROBCONS; PROBALIGN
CIPRES – Cyberinfrastructure for Phylogenic Research
