MFOLD
MFOLD performs RNA and DNA secondary structure prediction using nearest neighbor thermodynamic rules. The Mfold program is also part of the GCG program suite. It can accept input in Genbank, GCG and Fasta formats.
INPUT: Nucleic acid sequence in fasta format
TEST DATA SET
> S.cerevisiae 5S ribosomal RNA.
ggttgcggccatatctaccagaaagcaccgtttcccgtccgatcaactgtgttaagctggtagagcctgaccgagtagtgtatgggt
gaccatacgcgaaactcaggtgctgcaatct
CONTENTS OF OUTPUT FILE (with default settings, from the mfold server)
- test output 1 (pdf)
- test output 2 (pdf)
M. Zuker "Mfold web server for nucleic acid folding and hybridization prediction."
Nucleic Acids Res. 31 (13), 3406-15, (2003)