Phylogeny/Alignment Tools
- BOXSHADE - Color-Coded Plots of Pre-Aligned Sequences.
- CLIQUE - Finds the Largest Clique of Mutually Compatible Characters.
- CLUSTALWDIST - Generate Distance Matrix with Clustal.
- CLUSTALWPROF - Align Two Existing Alignments (Profiles)
- CLUSTALWTREE - Align Two Existing Alignments (Profiles)
- CONSENSE - Computes Consensus Trees by the Majority-rule Method
- DNADIST - Computes Distances between Species from Nucleic Acid Sequences.
- DNAPARS - Infer an Unrooted Phylogeny from NS Alignment
- DOLLOP - Estimates Phylogenies by Discrete Characters using Parsimony
- DRAWTREE- Draw Unrooted Phylogenetic Tree from Alignment
- DRAWGRAM - Draw Rooted Phylogenetic Tree from Alignment
- FITCH - Estimates Phylogenies from Distance Matrix Data
- KITSCH - Estimates Phylogenies from Distance Matrix Data
- MIX - Estimates Phylogenies from Discrete Character Matrices
- MSA – Multiple Sequence Alignment Tool
- MVIEW_ALIG - Multiple Alignment Display
- MVIEW_BLAST - View Blast results as a Multiple Alignment
- NEIGHBOR - Neighbor Joining and UPGMA (Average Linkage lustering)
- PARS - Multistate Discrete-characters Parsimony Method.
- PHYML – Calculate Phylogenies using Maximum Likelihood
- PROTDIST - Compute Evolutionary Distance Matrix from PS Alignment
- PROTPARS - Infer an Unrooted Phylogeny from PS Alignment
- SEQBOOT - Produces Multiple Data sets by bootstrap resampling
- UNROOT – Phylip Tool for Unrooting a Tree
If you don't see the tool you need, please Let us know! We can add tools very quickly.
