SIXPACK
SIXPACK is a "pretty printing" tool that displays a DNA sequence with 6-frame translation and open reading frames (ORFs). The program takes a nucleic acid sequence and writes out the forward and reverse senses of the sequence with the 3 forward and three reverse translations. It also writes a file containing the open reading frames that are larger than the specified minimum size (default 1 base, showing all possible open reading frames). The ORFs are written as protein sequences in the default output sequence format. An ORF is defined in this program as any possible translation between two STOP codons. Part of Emboss.
If you use EMBOSS, please cite: Rice, P, Longden, I, and Bleasby, A (2000) " EMBOSS: The European Molecular Biology Open Software Suite" Trends in Genetics 16, (6) 276--277.
Manual: http://embossgui.sourceforge.net/demo/manual/sixpack.html
INPUT = Nucleic Acid Sequences.
TEST FILES
Input file: sixpack_in.txt
Output file: sixpack_out.txt