Nucleic Acid Sequence Tools
- ALIGN - Optimal Global Sequence Alignment
- BL2SEQ - Compare nucleotide sequences to each other with BLAST
- BLASTN - Compare a NS to a NS DB
- BLASTX - Compare a PS-Derived-from-NS to a PS DB
- CLUSTALW - Multiple Sequence Alignment
- CLUSTALWPROF - Align Sequences to Existing Alignment (Profile)
- DEGAPSEQ – Removes GAPS from a sequence
- EPRIMER3 - Design Primer Pairs and Probes
- FASTA - Nucleic Acid Sequence Comparisons (NS or DB)
- FASTX - Compare Translated NS to PS DB
- FASTY - Compare Translated NS to PS DB
- LALIGN - Calculate Optimal Local Sequence Alignments
- MFOLD – predicts RNA secondary structure.
- PFSCAN - Sequence Search Against a Set of Profiles
- PPSEARCH - Sequence Search Against Prosite Profiles
- PROSEARCH - Sequence Search Against Prosite Profiles
- PRIMER3 - Design Primer Pairs and Probes. See EPRIMER3
- PRIMERCHECK - Calculates melting point, length, %GC for a primer sequence. (Replaced by EPRIMER3)
- PRIMERTM - Designs end primers based on a minimum Tm. (Replaced by EPRIMER3)
- REVCOMP - Generate Reverse Complement of NS (see REVSEQ)
- REVSEQ - Generate Reverse Complement of NS (replaces REVCOMP)
- SIXFRAME - Generate & Import 6 Frame Translations (replaced by SIXPACK)
- SIXPACK – Generate 6-frame translation (replaces SIXFRAME)
- SSEARCH - Smith-Waterman Local Alignment
- TACG v 4.0 - Analyze a NS for Restriction Enzyme Sites
- TBLASTX - Compare a translated NS to a translated DB
If you don't see the tool you need, please Let us know! We can add tools very quickly.
